Enzyme Immobilization in Gel Beads

Biochemical Engineering


Problem Statement: Consider a substrate-inhibited enzyme that is immobilized via physical entrapment in spherical gel beads. Unless noted otherwise, use the following parameters.

  v(s)=vm*s/(Km+s+Ki*s2)
    where  vm=0.05g/L-sec
           Km=3g/L
           Ki=8L/g
  Diffusion coefficient: De=10-5cm2/sec
  Substrate concentration in the bulk solution: sb=2g/L
  Radius of the spherical beads: R=0.5cm
  1. The diffusion coefficient given above is for which species (substrate, product, inhibitor, or enzyme)? In what medium (air, water, substrate solution, substrate-product mixture, polymer gel, across a membrane, across the reactor wall)?

    Solution:

    For substrate diffusing through the polymer gel.

  2. List the differential equation that governs the substrate profile within a spherical bead. Provide applicable boundary conditions. Briefly describe how to find a solution to the equation you set up.

    Solution:

      differential diffusional mass transfer rate = differential reaction rate
        De*d[4*p*r2*(ds/dr)] = 4*p*r2*dr*v(s)
      which is equivalent to:
        De*[(d2s/dr2)+2/r*(ds/dr)]=v(s)
        B.C. s(R)=sb
             ds(0)/dr=0
      Dimensionless form (normalize s wrt sb, and r wrt R):
        (d2s/dr2)+2/r*(ds/dr)=f2*v(s)
        B.C. s(1)=1
             ds(0)/dr=0
        f=R*sqrt(vm/De/Km)
      Transform into two coupled 1st-order odes
        ds/dr = z
        dz/dr = -2/r*z + f2*v(s)
        B.C. s(1)=1
             ds(0)/dr=0
      Solution Approach:
      1. Guess s(0)
      2. Start from s(0) and z(0)=0, integrate dimensionless odes from r=0 to r=1
      3. See if s(1)=1.  If yes, stop; otherwise, make another guess of s(0) and
         iterate until s(1)=1 is satisfied.
    

  3. When we solve the nondimensional differential equation from part b), we obtain s=1.59*10-7 at r=0 and ds/dr=8.08 at r=1, where s is the substrate concentration normalized with respect to sb and r is the distance from the center of the bead normalized with respect to R. Calculate the overall rate of reaction in a spherical gel bead.

    Solution:

      In dimensional units, ds/dr=8.08*sb/R=8.08*(2g/L)/(0.5cm)=32.32g/L-cm
      Rate of reaction = mass transfer across the surface = area*De*(ds/dr)
                       = 4*p*(0.5cm)2*(10-5cm2/sec)*(32.32g/L-cm)=1.015*10-6g/sec
    

  4. Calculate the initial rate of reaction in a spherical drop of the gelling solution (before gel formation, i.e., enzyme in solution) that contains substrate at a concentration of sb=2g/L.

    Solution:

      Rate of reaction /wo mass transfer = volume*v(sb)
        = volume*vm*sb/(Km+sb+Ki*sb2)
        = 4/3*p*(0.5cm)3*(0.05g/L-sec)*(2g/L)/(3g/L+2g/L+8L/g*(2g/L)2)
        = 1.415*10-6g/sec
    

  5. Briefly describe the physical meaning of the effectiveness factor. Calculate it for the given set of parameters. What does this number tell us about this system?

    Solution:

                             rate /w mass transfer resistance
      Effectiveness factor = ---------------------------------
                             rate /wo mass transfer resistance
                           = (1.015*10-6g/sec)/(1.415*10-6g/sec)
                           = 0.718
      The magnitude indicates that mass transfer resistance reduces the
      reaction rate by about 30%.
    

  6. We wish to reduce the substrate concentration from sf=2g/L in the feed to se=0.1g/L in the effluent in a well-mixed fluidized-bed column bioreactor. Can you use the effectiveness factor calculated in Part e) of this problem? If not, re-calculate the effectiveness factor. (Hint: se is small.)

    Solution:

    The effectiveness factor from the preceeding part is for sb=2g/L. The substrate concentration in the bulk solution for this part of the problem is se=0.1g/L. Thus, the denominator in the effectiveness factor, i.e., rate /wo mass transfer resistance, is different. Furthermore, the solution to the boundary value problem in Part b) also depends on the value of the substrate concentration in the bulk, which is half of the boundary conditions. Thus, the numerator in the effectiveness factor is also different. To calculate the effectiveness factor numerically, we can numerically solve the boundary value problem, which is beyond what we can do in this exam. Since se is small, the reaction rate expression is almost linear (i.e., first-order) with respect to s. With this linear approximation, we can approximate the effectiveness factor from the formula derived for linear rate expression.

      v(s)=(vm/Km)*s=(0.05/3sec)*s
      f=R*sqrt(vm/De/Km)
         =(0.5cm)*sqrt((0.05g/L-sec)/(10-5cm2/sec)/(3g/L))
         =15.8
      h=3/f*(1/tanh(f)-1/f)=0.178
    

  7. Given that the flow rate F is 1 L/hr and the packing void fraction is 0.6, calculate the length of a 10cm-diameter column required to achieve the level of conversion specified in the last part.

    Solution:

      Calculate the volume based on an ideal, fully packed reactor /wo mass transfer resistance.
      From the full rate expression in the original problem description, we have:
        At se=0.1g/L, v(se)=0.00157g/L-sec
      From the simplified, linearized approximation from part f), we have
        At se=0.1g/L, v(se)=0.00167g/L-sec
      Thus, we confirm that there is very little difference between the
      full rate expression and the linear approximation.
      Material balance at steady-state around a CSTR.
        In-Out=Reaction
        F*(sf-se)=V*v(se)
      Note that since the reactor is well mixed (irrespective of the shape --
      column or otherwise), we use the CSTR equation, not the plug flow equation.
      Thus, the ideal volume is:
        V = F*(sf-se)/v(se)
          = 1(L/hr)(2-0.1g/L)/(0.00167g/L-sec)
          = 0.317L
      Volume for a column corrected for mass transfer resistance and void fraction
        V=0.317L/0.178/(1-0.6)=4.45L
      Column length = V/(column cross section area)
                    = 4.45L/3.14/(5cm)2
                    = 56.6cm
    


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Biochemical Engineering -- Enzyme Immobilization in Gel Beads
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